Student Publication

Zhang W and Bruno RM, 2019, High-order thalamic inputs to primary somatosensory cortex are stronger and longer lasting than cortical inputs., eLife, 8

Zimnik AJ, Lara AH and Churchland MM, 2019, Perturbation of Macaque Supplementary Motor Area Produces Context-Independent Changes in the Probability of Movement Initiation., The Journal of neuroscience : the official journal of the Society for Neuroscience, 39:3217-3233

*Vaadia RD, *Li W, Voleti V, Singhania A, Hillman EMC and Grueber WB, 2019, Characterization of Proprioceptive System Dynamics in Behaving Drosophila Larvae Using High-Speed Volumetric Microscopy., Current biology : CB, 29:935-944.e4
*co-first authors

Birdsall, V., Martinez, J.C., Randolph, L.K., Hengst, U. and Waites, C.L., 2019, Live imaging of ESCRT proteins in microfluidically isolated hippocampal axons, In: Culetto E, Legouis R, editors. The ESCRT Complexes: Methods and Protocols. New York: Springer-Verlag - PubMed


Lindsay GW, Miller KD.
How biological attention mechanisms improve task performance in a large-scale visual system model. Elife. 2018 Oct 1;7. pii: e38105.

Charlotte L. Barkan, Darcy B. Kelley and Erik Zornik.
Premotor neuron divergence reflects vocal evolution, Journal of Neuroscience, 21 May 2018; (2018).

Parnaudeau S, Bolkan SS and Kellendonk C.
The Mediodorsal Thalamus: An Essential Partner of the Prefrontal Cortex for Cognition. Biological psychiatry, 83:648-656 (2018).

Burgos A, Honjo K, Ohyama T, Qian CS, Shin GJ, Gohl DM, Silies M, Tracey WD, Zlatic M, Cardona A, Grueber WB.
Nociceptive interneurons control modular motor pathways to promote escape behavior in Drosophila. eLife. 2018;7:e26016 doi: 10.7554/eLife.26016. March 2018.

DePasquale BCueva CJ, Rajan K, Escola GS and Abbott LF.
full-FORCE: A target-based method for training recurrent networks. PloS one, 2009 - 2016 13:e0191527 (2018).

Schaffer ES, Stettler DD, Kato D, Choi GB, Axel R and Abbott LF.
Odor Perception on the Two Sides of the Brain: Consistency Despite Randomness. Neuron, 98:736-742.e3 (2018).

Kohn, JR, Heath, SL and Behnia, R.
Eyes matched to the prize: the state of matched filters in insect visual circuits. , Frontiers in Neural Circuits. In press doi: 10.3389/fncir.2018.00026. (2018).

Jimenez JC, Su K, Goldberg AR, Luna VM, Biane JS, Ordek G, Zhou P, Ong SK, Wright MA, Zweifel L, Paninski L, Hen R, Kheirbek MA.
Anxiety Cells in a Hippocampal-Hypothalamic Circuit. Neuron 97, 670-683. (2018).

Pavlova IP, Shipley SC, Lanio M, Hen R, and Denny CA.
Comparison and optimization of whole-brain immunolabeling techniques for indelibly-labeled memory traces. Hippocampus. DOI:10.1002/hipo.22951. (2018).

Lee, M.A., Sitko, AA., Khalid, S., and Mason, C.A.
Spatiotemporal distribution of glia in and around the developing mouse optic tract. sw J Comp Neurol. doi: 10.1002/cne.24462. [Epub ahead of print] doi:10.1002/cne.24462. (2018).

Borgkvist, A., Lieberman, O. J., & Sulzer, D. 
Synaptic plasticity may underlie l-DOPA induced dyskinesia. Current opinion in neurobiology, 48, 71-78. (2018).

Post, M. R., Lieberman, O. J., & Mosharov, E. V.
Can Interactions Between α-Synuclein, Dopamine and Calcium Explain Selective Neurodegeneration in Parkinson's Disease? Frontiers in neuroscience, 12, article 161. (2018).

McGowan JC, Hill C, Mastrodonato A, LaGamma CT, Brachman RA, Narain NR, Kiebish MA, and Denny CA.
Prophylactic ketamine alters nucleotide and neurotransmitter metabolism in brain and plasma following stress. Neuropsychopharmacology.(2018).

Faye C, McGowan JC, Denny CA and David DJ.
Neurobiological mechanisms of stress resilience and implications for the aged population. Current Neuropharmacology, 16 (3):234-270 (2018).

Teixeira CM, Rosen ZB, Suri D, Sun Q, Hersh M, Sargin D, Dincheva I, Morgan AA, Spivack S, Krok AC, Hirschfeld-Stoler T, Lambe EK, Siegelbaum SA and Ansorge MS
Hippocampal 5-HT input regulates memory formation and Schaffer collateral excitation. Neuron Jun 6;98(5):992-1004.e4 (2018).

Fetsch CR, Odean NN, Jeurissen D, El-Shamayleh Y, Horwitz GD, Shadlen MN.
Focal optogenetic suppression in macaque area MT biases direction discrimination and choice confidence, but only transiently. bioRxiv, CSH, doi: (2018).

Christopher R Fetsch, Naomi N Odean, Danique Jeurissen, Yasmine El-Shamayleh, Gregory D Horwitz and Michael N Shadlen
Focal optogenetic suppression in macaque area MT biases direction discrimination and choice confidence, but only transiently. bioRxiv, CSH, doi: (2018).

Qian CS, Kaplow M, Lee JK, Grueber WB.
Diversity of Internal Sensory Neuron Axon Projection Patterns Is Controlled by the POU-Domain Protein Pdm3 in Drosophila Larvae. J Neurosci. 2018 Feb 21;38(8):2081-2093. doi: 10.1523/JNEUROSCI.2125-17.2018. Epub 2018 Jan 24.

Walker, C.A., Randolph, L.K., Matute, C., Alberdi, E., Baleriola, J., and Hengst, U.
Aβ1-42 triggers the generation of a retrograde signaling complex from sentinel mRNAs in axons. EMBO reports, e45435 (2018).

Russo AA, Bittner SR, Perkins SM, Seely JS , London B, Antonio L , Miri A, Marshall N , Kohn A, Jessell TM, Abbott LF, Cunningham JC and Churchland MC.
Motor Cortex Activity Embeds Muscle-like Commands in an Untangled Population Response. Neuron, 97:953-966 (2018).

Sitko AA, Kuwajima T and Mason CA.
Eye-specific segregation and differential fasciculation of developing retinal ganglion cell axons in the mouse visual pathway. The Journal of comparative neurology, 526:1077-1096 (2018).

Semework M, Steenrod SC and Goldberg ME.
A spatial memory signal shows that the parietal cortex has access to a craniotopic representation of space. eLife, 7 (2018).

Jonathan Miller , Andrew Watrous , Melina Tsitsiklis, Sang Ah Lee, Sameer Sheth, Catherine Schevon, Elliot Smith, Michael Sperling , Ashwini Sharan , Ali Asadi-Pooya, Gregory Worrell , Stephen Meisenhelter, Cory Inman , Kathryn Davis , Bradley Lega , Paul Wanda , Sandhitsu Das, Joel Stein , Richard Gorniak and Joshua Jacobs.
Lateralized hippocampal oscillations underlie distinct aspects of human spatial memory and navigation. Nature Communications (2018).

Vaadia R, Li W, Voleti V, Singhania A, Hillman EMC, Grueber WB.
Characterization of proprioceptive system dynamics in behaving Drosophila larvae using high-speed volumetric microscopy. bioRxiv doi:

Burgos A, Honjo K, Ohyama T, Qian CS, Shin GJ, Gohl D, Silies M, Tracey WD, Zlatic M, Cardona A, Grueber WB. 
Nociceptive interneurons control modular motor pathways to promote escape behavior in Drosophila.  eLife. 2018; e26016 doi: 10.7554/eLife.26016. March 2018

Kang YHR, Petzschner FH, Wolpert DM, and Shadlen MN.
Piercing of Consciousness as a Threshold-Crossing Operation. Current Biology 27, no. 15 (August 7, 2017): 2285–2295.e6.

McGowan JC, LaGamma CT, Lim SC, Tsitsiklis M, Neria Y, Brachman RA, Denny CA.
Prophylactic Ketamine Attenuates Learned Fear, Neuropsychopharmacology accepted article preview 27 January 2017; doi: 10.1038/npp.2017.19.

Kishore V Kuchibhotla, Jonathan V Gill, Grace W Lindsay, Eleni S Papadoyannis, Rachel E Field, Tom A Hindmarsh Sten, Kenneth D Miller & Robert C Froemke
Parallel processing by cortical inhibition enables context-dependent behavior Nature Neuroscience 20, 62–71. (2017).

Siegel P, Warren R, Wang Z, Yang J, Cohen D, Anderson JF, Murray L, Peterson BS.
Less is more: Neural activity during very brief and clearly visible exposure to phobic stimuli. Hum Brain Mapp. 2017 Feb 6. doi: 10.1002/hbm.23533. [Epub ahead of print]

Masurkar AV, Srinivas KV, Brann DH, Warren R, Lowes DC, Siegelbaum SA.
Medial and Lateral Entorhinal Cortex Differentially Excite Deep versus Superficial CA1 Pyramidal Neurons. Cell Rep. 2017 Jan 3;18(1):148-160. doi: 10.1016/j.celrep.2016.12.012.

Corty MM, Tam J, Grueber WB.
Dendritic diversification through transcription factor mediated suppression of alternative morphologies. Development 143:1351-1362. April 2016.

Warren R, Sawtell NB.
A comparative approach to cerebellar function: insights from electrosensory systems. Curr Opin Neurobiol. 2016 Dec;41:31-37. doi: 10.1016/j.conb.2016.07.012. Epub 2016 Aug 8.

Elsayed GF, Lara AH, Kaufman M, Churchland MM, Cunningham JP.
Reorganization between Preparatory and Movement Population Responses in Motor Cortex Nature Communications 7, 13239 doi: 10.1038/ncomms13239 (2016).

Seely JS, Kaufman MT, Ryu SI, Shenoy KV, Cunningham JP, Churchland MM.
Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput Biol. 2016 Nov 4;12(11):e1005164. doi: 10.1371/journal.pcbi.1005164. eCollection (2016).

Marshall KL, Clary RC, Baba Y, Orlowsky RL, Gerling GJ, Lumpkin EA.
Touch receptors undergo rapid remodeling in healthy skin 2016. Cell Rep 17(7): 1719-1727. doi: 10.1016/j.celrep.2016.10.034.

Long MA, Katlowitz KA. Svirsky MA, Clary RC, Byun TM, Majaj N, Oya H, Howard MA 3rd, Greenlee JD.
Functional segregation of cortical regions underlying speech timing and articulation 2016. Neuron 89(6): 1187-93. 10.1016/j.neuron.2016.01.032.

Picardo MA, Merel J, Katlowitz KA, Vallentin D, Okobi DE, Benezra SE, Clary RC, Pnevmatikakis EA, Paninski L, Long MA.
Population-level representation of a temporal sequence underlying song production in the zebra finch 2016. Neuron 90(4):866-76. doi: 10.1016/j.neuron.2016.02.016.

David Levitan,Yaihara Fortis-Santiago, Joshua A. Figueroa,Emily E. Reid,Takashi Yoshida,Nicholas C. Barry, Abigail Russo, Donald B. Katz.
Memory Retrieval Has a Dynamic Influence on the Maintenance Mechanisms That Are Sensitive to ζ-Inhibitory Peptide (ZIP). J NeuroSci.;(41);10654-10662; DOI: 10.1523/JNEUROSCI.1568-16.2016. October (2016).

Danielson NB, Turi GF, Ladow M, Chavlis S, Petrantonakis PC, Poirazi P, Losonczy A.
In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice. Neuron. 2017 Jan 5. pii: S0896-6273(16)30961-8. doi: 10.1016/j.neuron.2016.12.019. [Epub ahead of print]

Danielson NB, Zaremba JD, Kaifosh P, Bowler J, Ladow M, Losonczy A.
Sublayer-Specific Coding Dynamics during Spatial Navigation and Learning Hippocampal Area CA1. Neuron. 2016 Aug 3;91(3):652-65. doi: 10.1016/j.neuron.2016.06.020.

Migliori B, Datta MS,  and Tomer,R.
"Advanced light microscopy enables rapid mapping of brain structure and function in high resolution," Laser Focus World, 52, 12, 47-52 (Dec. 2016).

Danielson NB, Kaifosh P, Zaremba JD, Lovett-Barron M, Tsai J, Denny CA, Balough EM, Goldberg AR, Drew LJ, Hen R, Losonczy A, Kheirbek MA.
Distinct Contribution of Adult-Born Hippocampal Granule Cells to context Encoding. Neuron. (2016) Apr 6;90(1):101-12. doi: 10.1016/j.neuron.2016.02.019. PMID: 26971949.

Gabitto MI, Pakman A, Bikoff JB, Abbott LF, Jessell TM, Paninski L.
Bayesian Sparse Regression Analysis Documents the Diversity of Spinal Inhibitory Interneurons. Cell. 165(1): 220-233 (2016).

Bikoff Jb, Gabitto MI, drobac E, Machado T, Miri A, Mentis M, Jessell TM.
V1 interneuron diveristy reveals motor pool and join-specic spinal inhibitory microcircuits. Cell165(1): 207-219 (2016).

Padilla-Coreano N, Bolkan S, Pierce G, Blackman D, Spellman T and Gordon JA
Direct hippocampal-prefrontal input is required for anxiety-related neural activity and behavior. Neuron, 89, 857-866 (2016).

Reardon TR, Murray AJ, Turi GF, Wirblich C, Croce KR, Schnell MJ, Jessell TM, Losonczy A.
Rabies Virus CVS-N2c(ΔG) Strain Enhances Retrograde Synaptic Transfer and Neuronal Viability. Neuron 89(4):711-24. doi: 10.1016/j.neuron.2016.01.004. Epub (2016).

Pnevmatikakis, EA, Soudry, D, Gao, Y, Machado, TA , Merel JPfau, DReardon, T, Mu, Y, Lacefield, C, Yang, W, Ahrens, M, Peterka, D, Bruno, R, Jessell, TM, Yuste, R, & Paninski, L.
Simultaneous denoising, deconvolution, and demixing of calcium imaging data. Neuron (2016).

Barnard-Kubow KB, So NLT, Galloway LF.
Cytonuclear incompatibility contributes to the early stages of speciation. Evolution, 70: 2752–2766. doi:10.1111/evo.13075 (2016).

Marshall KL, Chadha M, deSouza LA, Sterbing-D'Angelo SJ, Moss CF, Lumpkin EA.
Somatosensory substrates of flight control in bats. Cell Rep. (2015 May 12);11(6):851-8. doi: 10.1016/j.celrep.2015.04.001. Epub 2015 Apr 30.

Dileepan T, Smith ED, Knowland D, Hsu M, Platt M, Bittner-Eddy P, Cohen B, Southern P, Latimer E, Harley E, Agalliu D, Cleary PP.
Group A Streptococcus intranasal infection promotes CNS infiltration by streptococcal-specific Th17 cells. J Clin Invest. 126(1):303-17. doi: 10.1172/JCI80792. Epub 2015 Dec 14.

Machado, TA, Pnevmatikakis, E, Paninski, L, Jessell, TM, Miri, A.
Primacy of flexor locomotor pattern revealed by ancestral reversion of motor neuron identity. Cell 162: 338-350 (2015).

Agarwal S, Kim H, Chan RB, Agarwal S, Williamson R, Cho W, Di Paolo G, Satchell KJ. Autophagy and endosomal trafficking inhibition by Vibrio cholerae MARTX toxin phosphatidylinositol-3-phosphate-specific phospholipase A1 activity. Nature Communications (2015). doi:10.1038/ncomms10135.

Ikiz B, Alvarez MJ, Ré DB, Le Verche V, Politi K, Lotti F, Phani S, Pradhan R, Yu C, Croft GF, Jacquier A, Henderson CE, Califano A, Przedborski S.
The Regulatory Machinery of Neurodegeneration in In Vitro Models of Amyotrophic Lateral Sclerosis
Cell Reports. 12(2):335-45. doi: 10.1016/j.celrep.2015.06.019. Epub 2015 Jul 2. (2015).

Felicity Gore, Edmund C. Schwartz, Baylor C. Brangers, Stanley Aladi, Joseph M Stujenske, Ekaterina Likhtik, Marco J Russo, Joshua A. Gordon, C Daniel  Salzman, Richard Axel.
Neural Representations of Unconditioned Stimuli in Basolateral Amygdala Mediate Innate and Learned Responses
Cell 162(1):134-145 (2015).

Stujenske JM, Spellman T, Gordon JA.
Modeling the spatiotemporal dynamics of light and heat propagation for in vivo optogenetics
Cell Reports  doi:10.1016/j.celrep.2015.06.036 (2015).

Kratsios P, Pinan-Lucarré B, Kerk SY, Weinreb A, Bessereau JL, Hobert O.
Transcriptional coordination of synaptogenesis and neurotransmitter signaling
Curr Biol 25(10):1282-95 (2015).

Josh Merel, Donald M Pianto, John P Cunningham, Liam Paninski.
Encoder-Decoder optimization for brain-computer interfaces
PLoS Computational Biology. 11(6):e1004288. doi: 10.1371/journal.pcbi.1004288. eCollection (2015).

Bolkan SSCarvalho Poyraz F, Kellendonk C.
Using human brain imaging studies as a guide toward animal models of schizophrenia
Neuroscience. [Epub ahead of print] (2015).

Iascone D, Henderson C, Lee J.
Spinal muscular atrophy: from tissue specificity to therapeutic strategies
F1000Prime Reports 7(04):10.12703/P7-04 (2015).

Kiani R, Cueva CJ, Reppas JB, Peixoto D, Ryu SI, Newsome WT.
Natural grouping of neural responses reveals spatially segregated clusters in prearcuate cortex
Neuron 85:1359-73 (2015).

Mendelsohn, AI, Simon, CM, Abbott, LF, Mentis, GZ, and Jessell, TM.
Activity Regulates the Incidence of Heteronymous Sensory-Motor Connections
Neuron 87:111-123 (2015).

Rechavi O, Houri-Ze'evi L, Anava S, Goh WS, Kerk SY, Hannon GJ, & Hobert O.
Starvation-induced transgenerational inheritance of small RNAs in C. elegans. 158(2):277-87. Cell (2014).

L. Buesing, T Machado, JP Cunningham, and L Paninski.
Clustered factor analysis of multineuronal spike data. NIPS 27 (2014).

Kaifosh P, Zaremba JD, Danielson N, Losonczy A.
SIMA: Python software for analysis of dynamic fluorescence imaging data
Frontiers in Neuroinformatics 8:80 (2014).

Stujenske JM, Likhtik E, Topiwala MA, Gordon JA.
Fear and safety engage competing patterns of theta-gamma coupling in the basolateral amygdala
Neuron 83:919-33 (2014).

Kiani R, Cueva CJ, Reppas JB, Newsome WT.
Dynamics of neural population responses in prefrontal cortex indicate changes of mind on single trials
Current Biology 24:1542-47 (2014).

Requarth T, Kaifosh P, Sawtell NB.
A role for mixed corollary discharge and proprioceptive signals in predicting the sensory consequences of movements
J Neurosci. 34:16103-16116 doi:10.1523/jneurosci.2751-14 (2014).

Kennedy AWayne GKaifosh P, Alviña K, Abbott LF, Sawtell NB.
A temporal basis for predicting the sensory consequences of motor commands in an electric fish
Nat Neurosci. 17:416-22. doi: 10.1038/nn.3650 (2014).

Kaifosh P, Losonczy A.
The Inside Track: Privileged Neural Communication through Axon-Carrying Dendrites
Neuron. 83:1231-1234 doi: 10.1016/j.neuron.2014.09.003. (2014).

Tilley DC, Eum KS, Fletcher-Taylor S, Austin DC, Dupré C, Patrón LA, Garcia RL, Lam K, Yarov-Yarovoy V, Cohen BE, Sack JT.
Chemoselective tarantula toxins report voltage activation of wild-type ion channels in live cells
Proc Natl Acad Sci USA  111:E4789-96 (2014).

Lovett-Barron M, Kaifosh P, Kheirbek M, Danielson N, Zaremba J, Reardon TR, Turi GF, Hen R, Zemelman BV, Losonczy A.
Dendritic inhibition in the hippocampus supports fear learning
Science 343:857-63 (2014).

Khan UA, Liu L, Provenzano FA, Berman DE, Profaci CP, Sloan R, Mayeux R, Duff KE, Small SA.
Molecular drivers and cortical spread of lateral entorhinal cortex dysfunction in preclinical Alzheimer's disease
Nat Neurosci 17:304-11 (2014).

Re DB, Le Verche V, Yu C, Amoroso MW, Politi KA, Phani S, Ikiz B, Hoffmann L, Koolen M, Nagata T, Papadimitriou D, Nagy P, Mitsumoto H, Kariya S, Wichterle H, Henderson CE, Przedborski S.
Necroptosis Drives Motor Neuron Death in Models of Both Sporadic and Familial ALS
Neuron doi: 10.1016/j.neuron.2014.01.011. (2014).

Kato S, Xu Y, Cho CE, Abbott LF, Bargmann CI.
Temporal Responses of C. elegans Chemosensory Neurons Are Preserved in Behavioral Dynamics
Neuron 81:616-28 (2014).

Kaplan A, Spiller KJ, Towne C, Kanning KC, Choe GT, Geber A, Akay T, Aebischer P, Henderson CE
Neuronal matrix metalloproteinase-9 is a determinant of selective neurodegeneration
Neuron 81:333-48 (2014).

Likhtik E, Stujenske JM, Topiwala MA, Harris AZ, Gordon JA
Prefrontal entrainment of amygdala activity signals safety in learned fear and innate anxiety
Nat Neurosci 17:106-113 (2014).

Peña CJ, Neugut YD, Calarco CA, Champagne FA
Effects of maternal care on the development of midbrain dopamine pathways and reward-directed behavior in female offspring
Eur J Neurosci doi: 10.1111/ejn.12479. (2014).

Lesniak DR, Marshall KL, Wellnitz SA, Jenkins BA, Baba Y, Rasband MN, Gerling GJ, Lumpkin EA
Computation identifies structural features that govern neuronal firing properties in slowly adapting touch receptors
Elife 3:e01488. doi: 10.7554/eLife.01488 (2014).

Cazorla M, de Carvalho FD, Chohan MO, Shegda M, Chuhma N, Rayport S, Ahmari SE, Moore H, Kellendonk C
Dopamine d2 receptors regulate the anatomical and functional balance of Basal Ganglia circuitry
Neuron 81:153-64 (2014).

Schaffer ES, Ostojic S, Abbott LF
A complex-valued firing-rate model that approximates the dynamics of spiking networks
PLoS Comput Biol doi: 10.1371/journal.pcbi.1003301 (2013).

O'Neill PK, Gordon JA, Sigurdsson T.
Theta oscillations in the medial prefrontal cortex are modulated by spatial working memory and synchronize with the hippocampus through its ventral subregion
J Neurosci 33:14211-24 (2013).

Peck C, Lau B, Salzman CD.
The primate amygdala combines information about space and value
Nat. Neurosci 16:340-8 (2013).

Kozberg MG, Chen BR, DeLeo SE, Bouchard MB, Hillman EM.
Resolving the transition from negative to positive blood oxygen level-dependent responses in the developing brain
Proc Natl Acad Sci USA 110:4380-5 (2013).

Ramirez AD, Paninski L
Fast inference in generalized linear models via expected log-likelihoods
J Comput Neurosci doi: 10.1007/s10827-013-0466-4 (2013).

Parnaudeau S, O'Neill PK, Bolkan SS, Ward RD, Abbas AI, Roth BL, Balsam PD, Gordon JA, Kellendonk C.
Inhibition of mediodorsal thalamus disrupts thalamofrontal connectivity and cognition
Neuron 77: 1151-62 (2013).

Kuwajima T, Sitko AA, Bhansali P, Jurgens C, Guido W, Mason C. 
ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue
Development 140:1364-8 (2013).

Morel E, Chamoun Z, Lasiecka ZM, Chan RB, Williamson RL, Vetanovetz C, Dall'Armi C, Simoes S, Point Du Jour KS, McCabe BD, Small SA, Di Paolo G. 
Phosphatidylinositol-3-phosphate regulates sorting and processing of amyloid precursor protein through the endosomal system
Nat Commun.  4:2250 (2013).

Kaifosh P, Lovett-Barron M, Turi GF, Reardon TR, Losonczy A. 
Septo-hippocampal GABAergic signaling across multiple modalities in awake mice
Nat Neurosci 16:1182-4 (2013).

Lovett-Barron M, Losonczy A. 
Circuits supporting the grid
Nat Neurosci 16:255-7 (2013).

Ahmadian Y*, Rubin DB*, Miller KD.
Analysis of the stabilized supralinear network.
Neural Computation 25:1994-2037 (2013).

Constantinople CM, Bruno RM
Deep cortical layers are activated directly by thalamus.
Science 340(6140):1591-4 (2013).

Hall IC, Ballagh IH, Kelley DB
The Xenopus amygdala mediates socially appropriate vocal communication signals
J Neurosci 33: 14534-48 (2013).

Rigotti M, Barak O, Warden MR, Wang XJ, Daw ND, Miller EK, Fusi S.
The importance of mixed selectivity in complex cognitive tasks.
Nature 497(7451):585-90 (2013).

Thuault SJ, Malleret G, Constantinople CM, Nicholls R, Chen I, Zhu J, Panteleyev A, Vronskaya S, Nolan MF, Bruno R, Siegelbaum SA, Kandel ER.
Prefrontal Cortex HCN1 Channels Enable Intrinsic Persistent Neural Firing and Executive Memory Function.
J Neurosci. 33:13583-99 (2013).

Barak O, Sussillo D, Romo R, Tsodyks M, Abbott LF.
From fixed points to chaos: three models of delayed discrimination.
Prog Neurobiol. 103:214-22 (2013).

Barak O, Rigotti M, Fusi S.
The sparseness of mixed selectivity neurons controls the generalization-discrimination trade-off.
J Neurosci 33(9):3844-56 (2013).

Pignataro L, Varodayan FP, Tannenholz LE, Protiva P, Harrison NL.
Brief alcohol exposure alters transcription in astrocytes via the heat shock pathway.
Brain Behav 3(2):114-33 (2013).

Schneider DM, Woolley SM.
Sparse and background-invariant coding of vocalizations in auditory scenes.
Neuron 79(1):141-52 (2013).

Steenrod SC, Phillips MH, Goldberg ME.
The lateral intraparietal area codes the location of saccade targets and not the dimension of the saccades that will be made to acquire them.
J Neurophysiol 109(10):2596-605 (2013).

Zhang W, Schneider DM, Belova MA, Morrison SE, Paton JJ, Salzman CD.
Functional circuits and anatomical distribution of response properties in the primate amygdala.
J Neurosci 33(2):722-33 (2013).

Babadi B, Abbott LF.
Pairwise analysis can account for network structures arising from spike-timing dependent plasticity.
PLoS Comput Biol 9(2):e1002906 (2013).
Leininger EC, Kelley DB.
Distinct neural and neuromuscular strategies underlie independent evolution of simplified advertisement calls.
Proc Biol Sci 280(1756):20122639 (2013).

Hoang P, Grueber WB. 
Dendritic self-avoidance: protocadherins have it covered
Cell Res 23:323-5 (2013).

Gray NA, Milak MS, DeLorenzo C, Ogden RT, Huang YY, Mann JJ, Parsey RV.
Antidepressant treatment reduces serotonin-1A autoreceptor binding in major depressive disorder.
Biol Psychiatry 74(1):26-31 (2013).

Sippy T, Yuste R.
Decorrelating action of inhibition in neocortical networks.
J Neurosci 33(23):9813-30 (2013).

Hinkle W, Cordell M, Leibel R, Rosenbaum M, Hirsch J.
Effects of reduced weight maintenance and leptin repletion on functional connectivity of the hypothalamus in obese humans.
PLoS One 8(3):e59114 (2013).

Stone EF, Fulton BO, Ayres JS, Pham LN, Ziauddin J, Shirasu-Hiza MM 
The circadian clock protein timeless regulates phagocytosis of bacteria in Drosophila
PLoS Pathog 8(1):e1002445 (2012).

Rajasethupathy P, Antonov I, Sheridan R, Frey S, Sander C, Tuschl T, Kandel ER
A Role for Neuronal piRNAs in the Epigenetic Control of Memory-Related Synaptic Plasticity.
Cell 149(3):693-707 (2012).

Kuwajima T, Yoshida Y, Takegahara N, Petros TJ, Kumanogoh A, Jessell T, Sakurai T, Mason C
Optic chiasm presentation of Semaphorin6D in the context of Plexin-A1 and Nr-CAM promotes retinal axon midline crossing.
Neuron 74(4):676-90 (2012).

Ipata AE, Gee AL, Goldberg ME.
Feature attention evokes task-specific pattern selectivity in V4 neurons.
Proc Natl Acad Sci U S A 109:16778-85 (2012).

Cardoso MM, Sirotin YB, Lima B, Glushenkova E, Das A.
The neuroimaging signal is a linear sum of neurally distinct stimulus- and task-related components.
Nat Neurosci 15:1298-306 (2012).

Sirotin YB, Cardoso M, Lima B, Das A
Spatial homogeneity and task-synchrony of the trial-related hemodynamic signal.
Neuroimage 59: 2783-97 (2012).

Paninski L, Vidne M, DePasquale B, Ferreira DG.
Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods
J. Comput Neurosci  33:1-19 (2012).

Kheirbek MA, Klemenhagen KC, Sahay A, Hen R.
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